Publications

Michael D Nicholson, David Cheek, Tibor Antal (2023). Sequential mutations in exponentially growing populations. PLOS Computational Biology.

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Michael D Nicholson, Lukas Endler, Alexandra Popa, Jakob-Wendelin Genger, Christoph Bock, Franziska Michor, Andreas Bergthaler (2022). Response to comment on “Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2”. Science Translational Medicine.

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Craig J Anderson, Lana Talmane, Juliet Luft, Michael D Nicholson, John Connelly, Oriol Pich, Susan Campbell, Vasavi Sundaram, Frances Connor, Paul A Ginno, Núria López-Bigas, Paul Flicek, Colin A Semple, Duncan T Odom, Sarah J Aitken, Martin S Taylor (2022). Strand-resolved mutagenicity of DNA damage and repair. bioRxiv.

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Martin A M Reijns, David A Parry, Thomas C Williams, Ferran Nadeu, Rebecca L Hindshaw, Diana O Rios Szwed, Michael D Nicholson, Paula Carroll, Shelagh Boyle, Romina Royo, Alex J Cornish, Hang Xiang, Kate Ridout, Colorectal Cancer Domain UK, 100,000 Genomes Project, Anna Schuh, Konrad Aden, Claire Palles, Elias Campo, Tatjana Stankovic, Martin S Taylor, Andrew P Jackson, The Genomics England Research Consortium, 000 Genomes Project Colorectal Cancer Domain UK 100 (2022). Signatures of TOP1 transcription-associated mutagenesis in cancer and germline. Nature.

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Rachael R Kirkbride, Emily Larkin, Mark K Tuttle, Michael D Nicholson, Brian G Jiang, Rokas Liubauskas, Jason D Matos, Michael Gavin, Diana E Litmanovich (2021). Quality and diagnostic performance of coronary computed tomography angiogram (CCTA): A comparison between pre-liver and pre-kidney transplant patients. European Journal of Radiology.

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Darlan C Minussi*, Michael D. Nicholson*, Hanghui Ye*, Alexander Davis, Kaile Wang, Toby Baker, Maxime Tarabichi, Emi Sei, Haowei Du, Mashiat Rabbani, Cheng Peng, Min Hu, Shanshan Bai, Yu-wei Lin, Aislyn Schalck, Asha Multani, Jin Ma, Thomas O McDonald, Anna Casasent, Angelica Barrera, Hui Chen, Bora Lim, Banu Arun, Funda Meric-Bernstam, Peter Van Loo, Franziska Michor, Nicholas E Navin (2021). Breast tumours maintain a reservoir of subclonal diversity during expansion. Nature.

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Alexandra Popa, Jakob-Wendelin Genger, Michael D Nicholson, Thomas Penz, Daniela Schmid, Stephan W Aberle, Benedikt Agerer, Alexander Lercher, Lukas Endler, Henrique Colaço, Mark Smyth, Michael Schuster, Miguel L Grau, Francisco Martínez-Jiménez, Oriol Pich, Wegene Borena, Erich Pawelka, Zsofia Keszei, Martin Senekowitsch, Jan Laine, Judith H Aberle, Monika Redlberger-Fritz, Mario Karolyi, Alexander Zoufaly, Sabine Maritschnik, Martin Borkovec, Peter Hufnagl, Manfred Nairz, Günter Weiss, Michael T Wolfinger, Dorothee von Laer, Giulio Superti-Furga, Núria López-Bigas, Elisabeth Puchhammer-Stöckl, Franz Allerberger, Franziska Michor, Christoph Bock, Andreas Bergthaler (2020). Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2. Science Translational Medicine.

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Martín Carballo-Pacheco*, Michael D Nicholson, Elin E Lilja, Rosalind J Allen, Bartlomiej Waclaw (2020). Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications. PLOS Computational Biology.

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Michael D Nicholson, Tibor Antal (2019). Competing evolutionary paths in growing populations with applications to multidrug resistance. PLOS Computational Biology.

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Michael D Nicholson, Tibor Antal (2016). Universal asymptotic clone size distribution for general population growth. Bull Math Biol.

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